Events Calendar

The biomedical literature captures the most current biomedical knowledge and is a tremendously rich resource for research with over 26 million publications currently indexed in the US National Library of Medicine’s PubMed repository. Large-scale processin

Speaker: Karin Verspoor, University of Melbourne

Talk Title: The scientific literature as a resource for biological prediction and data validation

Abstract: The biomedical literature captures the most current biomedical knowledge and is a tremendously rich resource for research with over 26 million publications currently indexed in the US National Library of Medicines PubMed repository. Large scale processing of the literature enables direct biomedical knowledge discovery. In this presentation, I will introduce the use of text mining techniques for applications in protein function and phenotype prediction. I will also explore a novel alternative use of the literature to support curation of biological database records by cross checking their content with associated literature this work further broadens the value of the literature in bioinformatics applications.


Biography: Karin is a Professor in the School of Computing and Information Systems and Deputy Director of the Health and Biomedical Informatics Centre at the University of Melbourne. Her research focuses on text analytics and machine learning for biomedical applications, to enable knowledge extraction from unstructured data as well as to provide clinical decision support. A current active project is related to enabling precision medicine with machine learning.

Karin was previously the Scientific Director for Health and Life Sciences at NICTA. Prior to arriving in Australia from the United States she held research roles at the University of Colorado School of Medicine and Los Alamos National Laboratory, and spent 5 years developing language technology software in two start up companies.

Host: Gully Burns

Location: Information Science Institute (ISI) - 11th floor large conference room

Audiences: Everyone Is Invited

Contact: Kary LAU